To make adjustments to an employee's pay after running End of Year:
Log into the end of year company.
Check the company is linked to the main payroll company (from Setups, Payroll, Options, Link to Primary Company) so that the adjustment will flow into STP
For each affected employee, process an empty adjustment pay (from Payroll, Transactions, Adjustments, Create or Modify)
Go to Workflows, and run Check Pays, ensuring the Pay Period Ending and Date Paid dates are set to 30th June and the correct end of year.
Run any pre-process reports, archive your payroll data and run Update Files to process your pays.
Log in to Single Touch Payroll in Attaché Online and select the Ready to submit batch that was created as a result of the adjustment pay.
Review the batch details and confirm the adjustment pay is correct.
Click Sign and submit and submit the batch to the ATO in the usual way.