To pay super to a contractor, you will need to setup the contractor as an employee in Employee Masterfile, the Tax Cert Category will be Voluntary Agreement. Follow the steps for Creating or onboarding a new employee.
You can then setup the employee's Superannuation fund if needed and set up Employee Super/Other accounts for ClickSuper reporting.
More information can be found from ATO website: https://www.ato.gov.au/Business/Super-for-employers/Work-out-if-you-have-to-pay-super/Super-for-contractors/#Offeringcontractorschoiceoffund
