For super to report correctly in Clicksuper, the Superstream Alternate File and other super reports there are three parts to the setup process for employees.
Setup the Superannuation fund.
Create a Super/Other Account to link the Fund Code to the employee.
Add an E: Employer Contribution line to the Standard Pay and link the Super/Other Account to it.
For steps 1 and 2 See: Set up or update super fund details for an employee.
For Step 3 Employee Standard Pay:
Go to Payroll, Masterfiles, Employee Standard Pays, Maintain.
Select the Employee code and Function: Modify pay.
Accept to move to move to the details page.
Look for the E: Employer Contribution line and Modify (F5) this line.
Select the Employee Account code to link the Super/Other account details.
Accept to save the change.
Finish to close out of the Standard Pay.